Transcriptome: special techniques, RNA-Seq, GRO-Seq, CAGE, others.
Long-read cDNA sequencing identifies functional pseudogenes in the human transcriptome | Genome Biology | Full Text
CAGE data analysis
CAGE | RNA-Seq Blog
CAGE Analysis | CAGE - A highly sensitive and precise means of gene expression analysis.
Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses
FANTOM - Basic CAGE Technology
CAGE: cap analysis of gene expression | Nature Methods
Comprehensive comparative analysis of 5′-end RNA-sequencing methods | Nature Methods
Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing | RNA-Seq Blog
piPipes – a set of pipelines for piRNA and transposon analysis via small RNA-seq, RNA-seq, degradome- and CAGE-seq, ChIP-seq and genomic DNA sequencing | RNA-Seq Blog
FANTOM - Basic CAGE Technology
Technology Overview | K.K. DNAFORM
FANTOM - HeliScopeCAGE
Integration of Single-Cell RNA- and CAGE-seq Reveals Tooth-Enriched Genes - Y. Chiba, K. Yoshizaki, T. Tian, K. Miyazaki, D. Martin, , Genomics and Computational Biology Core, Genomics and Computational Biology Core, K.
CAGE-sequencing identifies genome-wide activation of non-annotated TSSs... | Download Scientific Diagram
Key steps in the bioinformatic workflow for analysing CAGE sequencing... | Download Scientific Diagram
Cap analysis of gene expression (CAGE) sequencing reveals alternative promoter usage in complex disease | bioRxiv
RNA Sequencing of Primary Human LECs (A) Diagram of the CAGE RNA... | Download Scientific Diagram
YeasTSS: An Integrative Web Database of Yeast Transcription Start Sites
Cap Analysis of Gene Expression – CAGE experiments – Edinburgh CRF Genetics Core
Solving the transcription start site identification problem with ADAPT-CAGE: a Machine Learning algorithm for the analysis of CAGE data | Scientific Reports
Generation of tag-based libraries by SAGE and CAGE Schematic... | Download Scientific Diagram
Single-molecule long-read sequencing reveals a conserved intact long RNA profile in sperm | Nature Communications
